Status
[December 2023] The Setophoma terrestris 302B_T16_1 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 43.89 |
| Sequencing read coverage depth | 168.44x |
| # of contigs | 1536 |
| # of scaffolds | 1500 |
| # of scaffolds >= 2Kbp | 1195 |
| Scaffold N50 | 35 |
| Scaffold L50 (Mbp) | 0.33 |
| # of gaps | 36 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.52, 1.21, 1.19 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 48119 | 44541 | 92.6% |
| Ests | est.fasta | 116096710 | 114165487 | 98.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1792 | 1531 |
| transcript | 1643 | 1410 |
| exon | 570 | 355 |
| intron | 81 | 55 |
| description: | ||
| protein length (aa) | 472 | 387 |
| exons per gene | 2.88 | 2 |
| # of gene models | 15437 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Pleosporales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
