Status
Assembly v1.0: The assembly release version 1.0 is a draft assembly of Illumina reads (2x76 and 2x100 200bp, 2x76 3kb) constructed with the AllPathsLG assembler.
Summary statistics for the Serpula himantioides MUCL38935 v1.0
(previously identified as S. lacrymans var shastensis SHA21-2)
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 45.98 |
Sequencing read coverage depth | 127.5 |
# of contigs | 5964 |
# of scaffolds | 4893 |
# of scaffolds >= 2Kbp | 3291 |
Scaffold N50 | 554 |
Scaffold L50 (Mbp) | 0.02 |
# of gaps | 1071 |
% of scaffold length in gaps | 1.4% |
Three largest Scaffolds (Mbp) | 0.44, 0.20, 0.18 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
Ests | ESTs | 751838 | 9568 | 1.3% |
Other | Isotigs | 107971 | 1042 | 1.0% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1455 | 1154 |
transcript | 1088 | 855 |
exon | 200 | 129 |
intron | 85 | 59 |
description: | ||
protein length (aa) | 360 | 280 |
exons per gene | 5.44 | 4 |
# of gene models | 13805 |
Collaborators
- Inger Skrede, University of Oslo, Norway
- Sarah Watkinson, University of Oxford, UK
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Balasundaram SV, Hess J, Durling MB, Moody SC, Thorbek L, Progida C, LaButti K, Aerts A, Barry K, Grigoriev IV, Boddy L, Högberg N, Kauserud H, Eastwood DC, Skrede I
The fungus that came in from the cold: dry rot's pre-adapted ability to invade buildings.
ISME J. 2018 Mar;12(3):791-801. doi: 10.1038/s41396-017-0006-8
Balasundaram SV, Hess J, Durling MB, Moody SC, Thorbek L, Progida C, LaButti K, Aerts A, Barry K, Grigoriev IV, Boddy L, Högberg N, Kauserud H, Eastwood DC, Skrede I
The fungus that came in from the cold: dry rot's pre-adapted ability to invade buildings.
ISME J. 2018 Mar;12(3):791-801. doi: 10.1038/s41396-017-0006-8
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.