Info • Penicillium corylophilum UNK v1.0

Status

[October 2022] The Penicillium corylophilum UNK genome is one of two metagenome-extracted genomes from a set of contaminated samples. Sequenced by Illumina, binned DNA reads for Penicillium corylophilum UNK and Aspergillus ruber UNK were assembled separately by SPAdes, and a shared transcriptome library was assembled by Trinity. Subsequently, the JGI Annotation Pipeline produced structural and functional annotations. The P. corylophilum UNK mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 28.72
Sequencing read coverage depth 93.95x
# of contigs 251
# of scaffolds 228
# of scaffolds >= 2Kbp 209
Scaffold N50 25
Scaffold L50 (Mbp) 0.41
# of gaps 23
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.07, 0.90, 0.75


Note: this transcriptome library was determined to be a sample contaminated with Aspergillus ruber UNK. Therefore, trinity assembly mapping to Penicillium corylophilum
  • UNK is low compared to typical axenic data.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 87766 55930 63.7%
Ests est.fasta 148446375 142916362 96.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1903 1633
transcript 1733 1487
exon 554 331
intron 82 59
description:
protein length (aa) 492 407
exons per gene 3.13 3
# of gene models 10718


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.