Status
[February 2020] The genome of Olpidium bornovanus UBC F19785 was extracted from a metagenome, sequenced at the DOE Joint Genome Institute, binned by Ying Chang at Oregon State University, then assembled and annotated by Jason Stajich at University of California at Riverside, then imported into MycoCosm. Please note that this version is not maintained by Ying Chang or Jason Stajich and therefore not automatically updated.
Summary statistics for the Olpidium bornovanus UBC F19785
v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 28.25 |
Sequencing read coverage depth | |
# of contigs | 13525 |
# of scaffolds | 13525 |
# of scaffolds >= 2Kbp | 5567 |
Scaffold N50 | 4329 |
Scaffold L50 (Mbp) | 0.00 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.01, 0.01, 0.01 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1176 | 1015 |
transcript | 902 | 768 |
exon | 323 | 234 |
intron | 155 | 108 |
description: | ||
protein length (aa) | 282 | 240 |
exons per gene | 2.79 | 2 |
# of gene models | 8477 |
Collaborators
- Ying Chang, Oregon State University, OR
- Joey Spatafora, Oregon State University, OR
- Jason Stajich, UC Riverside, California
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Chang Y, Rochon D, Sekimoto S, Wang Y, Chovatia M, Sandor L, Salamov A, Grigoriev IV, Stajich JE, Spatafora JW
Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi.
Sci Rep. 2021 Feb 5;11(1):3217. doi: 10.1038/s41598-021-82607-4
Chang Y, Rochon D, Sekimoto S, Wang Y, Chovatia M, Sandor L, Salamov A, Grigoriev IV, Stajich JE, Spatafora JW
Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi.
Sci Rep. 2021 Feb 5;11(1):3217. doi: 10.1038/s41598-021-82607-4
Links
- JGI PhyloGroup Portals: Fungi
Funding
This project was not sequenced at the JGI.