Status
The genome sequence and gene prediction of Magnaporthiopsis poae have not been determined by the JGI, but were downloaded from the Broad Institute on November 14th 2015. Please note that this copy of the genome is not maintained by Broad and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Magnaporthiopsis poae ATCC
64411 v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 39.50 |
Sequencing read coverage depth | unknown |
# of contigs | 3106 |
# of scaffolds | 205 |
# of scaffolds >= 2Kbp | 205 |
Scaffold N50 | 5 |
Scaffold L50 (Mbp) | 3.43 |
# of gaps | 2901 |
% of scaffold length in gaps | 12.6% |
Three largest Scaffolds (Mbp) | 6.15, 5.28, 4.03 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 2143 | 1827 |
transcript | 1906 | 1578 |
exon | 691 | 410 |
intron | 136 | 89 |
description: | ||
protein length (aa) | 427 | 327 |
exons per gene | 2.76 | 2 |
# of gene models | 12335 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Okagaki LH, Nunes CC, Sailsbery J, Clay B, Brown D, John T, Oh Y, Young N, Fitzgerald M, Haas BJ, Zeng Q, Young S, Adiconis X, Fan L, Levin JZ, Mitchell TK, Okubara PA, Farman ML, Kohn LM, Birren B, Ma LJ, Dean RA
Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi.
G3 (Bethesda). 2015 Sep 28;5(12):2539-45. doi: 10.1534/g3.115.020057
Okagaki LH, Nunes CC, Sailsbery J, Clay B, Brown D, John T, Oh Y, Young N, Fitzgerald M, Haas BJ, Zeng Q, Young S, Adiconis X, Fan L, Levin JZ, Mitchell TK, Okubara PA, Farman ML, Kohn LM, Birren B, Ma LJ, Dean RA
Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi.
G3 (Bethesda). 2015 Sep 28;5(12):2539-45. doi: 10.1534/g3.115.020057
Funding
This project was not sequenced at the JGI.