Status
[May 2024] The Lipomyces yamadae CBS 7532 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 16.81 |
| Sequencing read coverage depth | 381.27x |
| # of contigs | 217 |
| # of scaffolds | 208 |
| # of scaffolds >= 2Kbp | 180 |
| Scaffold N50 | 22 |
| Scaffold L50 (Mbp) | 0.25 |
| # of gaps | 9 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.72, 0.58, 0.55 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 28709 | 26845 | 93.5% |
| Ests | est.fasta | 338477619 | 335552219 | 99.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1963 | 1742 |
| transcript | 1817 | 1610 |
| exon | 575 | 340 |
| intron | 70 | 59 |
| description: | ||
| protein length (aa) | 458 | 383 |
| exons per gene | 3.16 | 3 |
| # of gene models | 7016 |
Collaborators
- Kyle Pomraning, Pacific Northwest National Laboratory, WA
- Scott Baker, Environmental Molecular Science Laboratory, WA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Lipomycetaceae Lipomyces
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
