Info • Galdieria sulphuraria YNP5578.1

Status

The Galdieria sulphuraria YNP5578.1 genome sequence and gene models were not determined by the Joint Genome Insitute, but were downloaded from the Red Algal Resources to Promote Integrative Research in Algal Genomics webpage on October 31, 2019. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 460 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by Rossoni et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 14.44
Sequencing read coverage depth 53.58x
# of contigs 115
# of scaffolds 115
# of scaffolds >= 2Kbp 115
Scaffold N50 31
Scaffold L50 (Mbp) 0.17
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.71, 0.32, 0.31


Gene Models FilteredModels1
length (bp) of: average median
gene 1622 1299
transcript 1451 1167
exon 390 213
intron 62 53
description:
protein length (aa) 484 389
exons per gene 3.72 3
# of gene models 5658


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.