Info • Gracilaria caudata M-176 S67

Status

The Gracilaria caudata M-176 S67 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from Rhodoexplorer on July 18, 2023. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 880 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by its authors and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 30.78
Sequencing read coverage depth 171.0x
# of contigs 2845
# of scaffolds 2830
# of scaffolds >= 2Kbp 2206
Scaffold N50 385
Scaffold L50 (Mbp) 0.02
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.14, 0.12, 0.12


Gene Models FilteredModels1
length (bp) of: average median
gene 1447 1152
transcript 1326 1083
exon 886 684
intron 245 102
description:
protein length (aa) 442 361
exons per gene 1.50 1
# of gene models 8185


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.