Info • Cyanidium caldarium DBV 063 E5

Status

The Cyanidium caldarium DBV 063 E5 genome assembly and gene models have not been determined by the JGI, but were downloaded from NCBI on February 7, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced annotated by the JGI , we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 100 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 8.79
# of contigs 20
# of scaffolds 20
# of scaffolds >= 2Kbp 20
Scaffold N50 8
Scaffold L50 (Mbp) 0.49
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.84, 0.60, 0.59


Gene Models FilteredModels2
length (bp) of: average median
gene 1466 1221
transcript 1464 1218
exon 1450 1206
intron 181 129
description:
protein length (aa) 488 406
exons per gene 1.01 1
# of gene models 4770


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.