Info • Aspergillus bicolor CBS425.77 v1.0

Status

[October 2022] The Aspergillus bicolor CBS425.77 genome is one of two metagenome-extracted genomes from a set of contaminated samples. Sequenced by Illumina, binned DNA reads for Aspergillus bicolor CBS425.77 and Sarocladium kiliense UNK were assembled separately by SPAdes, and a shared transcriptome library was assembled by Trinity. Subsequently, the JGI Annotation Pipeline produced structural and functional annotations. The A. bicolor CBS425.77 mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 35.54
Sequencing read coverage depth 96.45x
# of contigs 966
# of scaffolds 911
# of scaffolds >= 2Kbp 785
Scaffold N50 109
Scaffold L50 (Mbp) 0.09
# of gaps 55
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.53, 0.37, 0.35


Note: this transcriptome library was determined to be a sample heavily contaminated with Sarocladium kiliense UNK. Therefore, mapping to Aspergillus bicolor CBS425.77 is low compared to typical axenic samples.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 51409 28842 56.1%
Ests est.fasta 15305578 9093430 59.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1805 1471
transcript 1604 1325
exon 469 272
intron 85 59
description:
protein length (aa) 485 387
exons per gene 3.42 3
# of gene models 12438


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.