Gonapodya prolifera v1.0

Identified secondary metabolite regions using strictness 'relaxed'

scaffold_2

Region	Type	From	To	Most similar known cluster		Similarity
Region 112.1	betalactone	731,305	767,222

scaffold_46

Region	Type	From	To	Most similar known cluster		Similarity
Region 294.1	terpene	45,898	77,304

scaffold_8

Region	Type	From	To	Most similar known cluster		Similarity
Region 331.1	NRPS-like	22,214	87,465

scaffold_80

Region	Type	From	To	Most similar known cluster		Similarity
Region 332.1	terpene	89,829	121,522

scaffold_84

Region	Type	From	To	Most similar known cluster		Similarity
Region 336.1	terpene	121,536	153,532

Region	Type	From	To	Similarity
Region 112.1	betalactone	731,305	767,222
Region 294.1	terpene	45,898	77,304
Region 331.1	NRPS-like	22,214	87,465
Region 332.1	terpene	89,829	121,522
Region 336.1	terpene	121,536	153,532

No secondary metabolite regions were found in these records:: scaffold_1; scaffold_10; scaffold_100; scaffold_101; scaffold_102; scaffold_103; scaffold_104; scaffold_105; scaffold_106; scaffold_107; scaffold_108; scaffold_109; scaffold_11; scaffold_110; scaffold_111; scaffold_112; scaffold_113; scaffold_114; scaffold_115; scaffold_116; scaffold_117; scaffold_118; scaffold_119; scaffold_12; scaffold_120; scaffold_121; scaffold_122; scaffold_123; scaffold_124; scaffold_125; scaffold_126; scaffold_127; scaffold_128; scaffold_129; scaffold_13; scaffold_130; scaffold_131; scaffold_132; scaffold_133; scaffold_134; scaffold_135; scaffold_136; scaffold_137; scaffold_138; scaffold_139; scaffold_14; scaffold_140; scaffold_141; scaffold_142; scaffold_143; scaffold_144; scaffold_145; scaffold_146; scaffold_147; scaffold_148; scaffold_149; scaffold_15; scaffold_150; scaffold_151; scaffold_152; scaffold_153; scaffold_154; scaffold_155; scaffold_156; scaffold_157; scaffold_158; scaffold_159; scaffold_16; scaffold_160; scaffold_161; scaffold_162; scaffold_163; scaffold_164; scaffold_165; scaffold_166; scaffold_167; scaffold_168; scaffold_169; scaffold_17; scaffold_170; scaffold_171; scaffold_172; scaffold_173; scaffold_174; scaffold_175; scaffold_176; scaffold_177; scaffold_178; scaffold_179; scaffold_18; scaffold_180; scaffold_181; scaffold_182; scaffold_183; scaffold_184; scaffold_185; scaffold_186; scaffold_187; scaffold_188; scaffold_189; scaffold_19; scaffold_190; scaffold_191; scaffold_192; scaffold_193; scaffold_194; scaffold_195; scaffold_196; scaffold_197; scaffold_198; scaffold_199; scaffold_20; scaffold_200; scaffold_201; scaffold_202; scaffold_203; scaffold_204; scaffold_205; scaffold_206; scaffold_207; scaffold_208; scaffold_209; scaffold_21; scaffold_210; scaffold_211; scaffold_212; scaffold_213; scaffold_214; scaffold_215; scaffold_216; scaffold_217; scaffold_218; scaffold_219; scaffold_22; scaffold_220; scaffold_221; scaffold_222; scaffold_223; scaffold_224; scaffold_225; scaffold_226; scaffold_227; scaffold_228; scaffold_229; scaffold_23; scaffold_230; scaffold_231; scaffold_232; scaffold_233; scaffold_234; scaffold_235; scaffold_236; scaffold_237; scaffold_238; scaffold_239; scaffold_24; scaffold_240; scaffold_241; scaffold_242; scaffold_243; scaffold_244; scaffold_245; scaffold_246; scaffold_247; scaffold_248; scaffold_249; scaffold_25; scaffold_250; scaffold_251; scaffold_252; scaffold_253; scaffold_254; scaffold_255; scaffold_256; scaffold_257; scaffold_258; scaffold_259; scaffold_26; scaffold_260; scaffold_261; scaffold_262; scaffold_263; scaffold_264; scaffold_265; scaffold_266; scaffold_267; scaffold_268; scaffold_269; scaffold_27; scaffold_270; scaffold_271; scaffold_272; scaffold_273; scaffold_274; scaffold_275; scaffold_276; scaffold_277; scaffold_278; scaffold_279; scaffold_28; scaffold_280; scaffold_281; scaffold_282; scaffold_283; scaffold_284; scaffold_285; scaffold_286; scaffold_287; scaffold_288; scaffold_289; scaffold_29; scaffold_290; scaffold_291; scaffold_292; scaffold_293; scaffold_294; scaffold_295; scaffold_296; scaffold_297; scaffold_298; scaffold_299; scaffold_3; scaffold_30; scaffold_300; scaffold_301; scaffold_302; scaffold_303; scaffold_304; scaffold_305; scaffold_306; scaffold_307; scaffold_308; scaffold_309; scaffold_31; scaffold_310; scaffold_311; scaffold_312; scaffold_313; scaffold_314; scaffold_315; scaffold_316; scaffold_317; scaffold_318; scaffold_319; scaffold_32; scaffold_320; scaffold_321; scaffold_322; scaffold_323; scaffold_324; scaffold_325; scaffold_326; scaffold_327; scaffold_328; scaffold_329; scaffold_33; scaffold_330; scaffold_331; scaffold_332; scaffold_333; scaffold_334; scaffold_335; scaffold_336; scaffold_337; scaffold_338; scaffold_339; scaffold_34; scaffold_340; scaffold_341; scaffold_342; scaffold_343; scaffold_344; scaffold_345; scaffold_346; scaffold_347; scaffold_348; scaffold_349; scaffold_35; scaffold_350; scaffold_351; scaffold_352; scaffold_36; scaffold_37; scaffold_38; scaffold_39; scaffold_4; scaffold_40; scaffold_41; scaffold_42; scaffold_43; scaffold_44; scaffold_45; scaffold_47; scaffold_48; scaffold_49; scaffold_5; scaffold_50; scaffold_51; scaffold_52; scaffold_53; scaffold_54; scaffold_55; scaffold_56; scaffold_57; scaffold_58; scaffold_59; scaffold_6; scaffold_60; scaffold_61; scaffold_62; scaffold_63; scaffold_64; scaffold_65; scaffold_66; scaffold_67; scaffold_68; scaffold_69; scaffold_7; scaffold_70; scaffold_71; scaffold_72; scaffold_73; scaffold_74; scaffold_75; scaffold_76; scaffold_77; scaffold_78; scaffold_79; scaffold_81; scaffold_82; scaffold_83; scaffold_85; scaffold_86; scaffold_87; scaffold_88; scaffold_89; scaffold_9; scaffold_90; scaffold_91; scaffold_92; scaffold_93; scaffold_94; scaffold_95; scaffold_96; scaffold_97; scaffold_98; scaffold_99

Compact view

scaffold_2 - Region 1 - betalactone

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Location: 731,305 - 767,222 nt. (total: 35,918 nt) Show pHMM detection rules used

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

scaffold_46 - Region 1 - terpene

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Location: 45,898 - 77,304 nt. (total: 31,407 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

scaffold_8 - Region 1 - NRPS-like

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Location: 22,214 - 87,465 nt. (total: 65,252 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 22213 - 87465:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Aad)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

95124

Search NORINE for peptide: strict or relaxed

AMP-binding (339..801): Aad

nrpys: Aad

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DPRHFVMRAK
Nearest Stachelhaus code(s):: Aad DPRHFVMRAK (97% 8� match)
Stachelhaus code match:: 100% (strong)

scaffold_80 - Region 1 - terpene

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Location: 89,829 - 121,522 nt. (total: 31,694 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

scaffold_84 - Region 1 - terpene

Download region GenBank file

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Location: 121,536 - 153,532 nt. (total: 31,997 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.