Batrachochytrium dendrobatidis JAM81 v1.0

Identified secondary metabolite regions using strictness 'relaxed'

scaffold_1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NRPS-like	4,166,894	4,231,548

scaffold_14

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	terpene	393,997	425,378

scaffold_2

Region	Type	From	To	Most similar known cluster		Similarity
Region 63.1	NRPS	925,970	991,595

scaffold_9

Region	Type	From	To	Most similar known cluster		Similarity
Region 120.1	terpene	644,205	675,430

Region	Type	From	To	Similarity
Region 1.1	NRPS-like	4,166,894	4,231,548
Region 24.1	terpene	393,997	425,378
Region 63.1	NRPS	925,970	991,595
Region 120.1	terpene	644,205	675,430

No secondary metabolite regions were found in these records:: scaffold_10; scaffold_100; scaffold_103; scaffold_105; scaffold_109; scaffold_11; scaffold_111; scaffold_113; scaffold_114; scaffold_116; scaffold_117; scaffold_119; scaffold_12; scaffold_120; scaffold_121; scaffold_122; scaffold_127; scaffold_128; scaffold_129; scaffold_13; scaffold_130; scaffold_131; scaffold_140; scaffold_141; scaffold_142; scaffold_145; scaffold_148; scaffold_15; scaffold_150; scaffold_151; scaffold_155; scaffold_157; scaffold_158; scaffold_159; scaffold_16; scaffold_160; scaffold_161; scaffold_167; scaffold_169; scaffold_17; scaffold_170; scaffold_171; scaffold_172; scaffold_173; scaffold_176; scaffold_18; scaffold_181; scaffold_182; scaffold_183; scaffold_184; scaffold_185; scaffold_187; scaffold_188; scaffold_189; scaffold_19; scaffold_190; scaffold_191; scaffold_192; scaffold_195; scaffold_198; scaffold_20; scaffold_201; scaffold_203; scaffold_206; scaffold_207; scaffold_209; scaffold_210; scaffold_211; scaffold_212; scaffold_213; scaffold_214; scaffold_217; scaffold_22; scaffold_220; scaffold_23; scaffold_24; scaffold_26; scaffold_3; scaffold_30; scaffold_32; scaffold_34; scaffold_35; scaffold_37; scaffold_38; scaffold_4; scaffold_40; scaffold_41; scaffold_42; scaffold_43; scaffold_45; scaffold_47; scaffold_49; scaffold_5; scaffold_50; scaffold_53; scaffold_55; scaffold_56; scaffold_6; scaffold_60; scaffold_61; scaffold_65; scaffold_66; scaffold_69; scaffold_7; scaffold_71; scaffold_73; scaffold_75; scaffold_77; scaffold_79; scaffold_8; scaffold_81; scaffold_84; scaffold_85; scaffold_86; scaffold_87; scaffold_88; scaffold_91; scaffold_93; scaffold_94; scaffold_96; scaffold_97; scaffold_98; scaffold_99

Compact view

scaffold_1 - Region 1 - NRPS-like

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Location: 4,166,894 - 4,231,548 nt. (total: 64,655 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 4166893 - 4231548:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Aad)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

8274

Search NORINE for peptide: strict or relaxed

AMP-binding (276..733): Aad

nrpys: Aad

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Aliphatic chain with H-bond donor (Asp, Asn, Glu, Gln, Aad)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DPRNFVMRAK
Nearest Stachelhaus code(s):: Aad DPRHFVMRAK (88% 8� match)
Stachelhaus code match:: 90% (moderate)

scaffold_14 - Region 1 - terpene

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Location: 393,997 - 425,378 nt. (total: 31,382 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

scaffold_2 - Region 1 - NRPS

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Location: 925,970 - 991,595 nt. (total: 65,626 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

NRPS/PKS domains

KnownClusterBlast

NRPS/PKS modules

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters from MIBiG 3.1

No matches found.

Module view

Legend

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 925969 - 991595:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (Ala)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

22926

Search NORINE for peptide: strict or relaxed

AMP-binding (921..1308): Ala

nrpys: Ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic (Ala, Gly, Val, Leu, Ile, Abu, Ival, Ser, Thr, Hpg, Dhpg, Cys, Pro, Hpr)
Large clusters prediction:: Apolar, aliphatic (Gly, Ala, Val, Leu, Ile, Abu, Ival)
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVWFVAAIIK
Nearest Stachelhaus code(s):: Ala DVWVTAAIIK (62% 8� match); Aol DVWYVAAIYK (53% 8� match)
Stachelhaus code match:: 80% (moderate)

scaffold_9 - Region 1 - terpene

Download region GenBank file

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Location: 644,205 - 675,430 nt. (total: 31,226 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Gene overview

KnownClusterBlast

Gene/CDS overview

Filter:

Automatically zoom to filtered/selected features

Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.