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Publications
- Metagenome-assembled-genomes recovered from the Arctic drift expedition MOSAiCWilliam Boulton, et al. Scientific Data, 2025
- Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algaeZoltán Füssy, et al. Nature Communications, 2025
- Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissimaKelly DeWeese, et al. Frontiers in Genetics, 2025
- Genomes of multicellular algal sisters to land plants illuminate signaling network evolutionXuehuan Feng, et al. Nature Genetics, 2024
- Diverse fates of ancient horizontal gene transfers in extremophilic red algaeJulia Van Etten, et al. Enviromental Microbiology, 2024
- The protist Aurantiochytrium has universal subtelomeric rDNAs and is a host for mirusvirusesJackie L. Collier, et al. Current Biology, 2023
- A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)Jose Diesel, Gary Molano, Gabriel J Montecinos et al., 2023
- Multi-omics profiling of the cold tolerant Monoraphidium minutum 26B-AM in response to abiotic stressSara Calhoun, Bishoy Kamel, Tisza A.S. Bell et al., 2022
- Convergent evolution and horizontal gene transfer in Arctic Ocean microalgaeRichard G Dorrell, Alan Kuo, Zoltan Füssy et al., 2022
- A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnologyCalhoun, S., Bell, T.A.S., Dahlin, L.R. et al., 2021
- Genomic adaptations of the green alga Dunaliella salina to life under high salinityJürgen E.W. Polle, Sara Calhoun, Zaid McKie-Krisberg et al., 2020
- The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerataArmaleo D, et al. BMC Genomics. 2019
Announcements
- January 9-14, 2026Plant and Animal Genomics ConferenceSan Diego, CA
- March 3-5, 2026JGI-EMSL User MeetingSeattle, WA
- June 15-19, 2026Phycological Society of America meetingJuneau, AK
Latest Additions
PhycoCosm
(280 genomes)
SearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesGeo MappingDownloadAlaria esculenta A1Amoebophrya ceratii AT5.2Apatococcus lobatus SAG 2145Aplanochytrium kerguelense PBS07 v1.0Arabidopsis lyrataAsterionellopsis glacialis CCMP134 v1.0Asterochloris glomerata Cgr/DA1pho v2.0Astrephomene gubernaculifera NIES-4017Aurantiochytrium limacinum ATCC MYA-1381 v1.0Aureococcus anophagefferens clone 1984 v1.0Auxenochlorella protothecoides 0710Auxenochlorella protothecoides UTEX 25Bacillariophyceae sp. MOSAICH1_1 v1.0Baffinella frigidus CCMP 2293 v1.0Bathycoccus prasinos RCC1105Bigelowiella natans CCMP2755 v1.0Blastocystis hominis Singapore isolate B (sub-type 7)Botryococcus braunii ShowaBremia lactucae SF5Breviolum minutumBryopsis sp. KO-2023Cafeteria roenbergensis BVICaulerpa lentilliferaChaetoceros tenuissimus NIES-3715Chara braunii S276Chlamydomonas eustigma NIES-2499Chlamydomonas incerta SAG 7.73Chlamydomonas priscuii UWO241Chlamydomonas reinhardtii CC-4532 v6.1Chlamydomonas reinhardtii CC-503 v5.6Chlamydomonas schloesseri CCAP 11/173Chlorella sp. A99Chlorella sorokiniana DOE1412Chlorella sorokiniana UTEX 1230Chlorella sorokiniana UTEX 1602Chlorella sorokiniana strain 1228Chlorella variabilis NC64A v1.0Chlorellaceae sp. bin 3300059473_4402 v1.0Chlorellaceae sp. bin 3300059473_4966 v1.0Chlorokybus atmophyticus CCAC 0220Chloromonas remiasii CCCryo 005-99 v1.0Chloropicon primus CCMP1205Chondrus crispus StackhouseChromera velia CCMP2878Chromochloris zofingiensis var. SAG 211-14 v6.0Chrysochromulina parva LackeyChrysochromulina tobin CCMP291Cladocopium goreaui SCF055-01Cladosiphon okamuranus S strainCoccomyxa pringsheimii SAG 216-7Coccomyxa subellipsoidea C-169 v3.0Conticribra weissflogii CCMP 1336Craspedostauros australis CCMP3328 v1.0Cyanidiococcus sp. NIES 2137 v1.0Cyanidiococcus yangmingshanensis 8.1.23 F7Cyanidioschyzon merolae SoosCyanidioschyzon merolae strain 10DCyanidium caldarium DBV 063 E5Cyanophora paradoxa CCMP329Cyanophora paradoxa CCMP329Cyclotella cryptica CCMP332 v2.0Cylindrotheca closterium CA1.15 DCG0923Cylindrotheca closterium DCG 1248 v1.0Desmodesmus armatus UTEX B 2533 v2.0Desmodesmus armatus isolate SE107 v1.0Diacronema lutheri NIVA-4/92Dicrateria rotunda RCC2298 v1.1Dicrateria rotunda RCC4477 v3.0Dicrateria rotunda RCC4500 v1.0Dicrateria rotunda RCC4501 v1.0Dicrateria rotunda RCC4780 v1.0Dunaliella salina CCAP19/18Durusdinium trenchii NIES-2907Ectocarpus siliculosus Ec 32Edaphochlamys debaryana CCAP 11/70Effrenium voratum CCMP421Elliptochloris bilobata SAG 245.80Emiliania huxleyi CCMP1516 v1.0Enallax costatus CCAP 276/31 v1.1Entomoneis sp. UTEX 11IV18-2A FL v1.0Euglena gracilis CCAP 1224/5Z v1.0Fistulifera solaris JPCC DA0580Flechtneria rotunda SEV3VF49 v1.1Fragilaria crotonensis SAG 28.96Fragilariopsis cylindrus CCMP 1102Fragilariopsis cylindrus RCC4608 v1.0Fragilariopsis cylindrus RCC5501 v1.0Fugacium kawagutii CCMP2468Galdieria phlegrea SoosGaldieria sulphuraria 002Galdieria sulphuraria 074WGaldieria sulphuraria 5572Galdieria sulphuraria AzoraGaldieria sulphuraria MS1Galdieria sulphuraria MtShGaldieria sulphuraria RT22Galdieria sulphuraria SAG21.92Galdieria sulphuraria YNP5578.1Galdieria yellowstonensis 108.79 E11Giardia intestinalis ATCC 50803Glossomastix sp. RCC3688 v2.1Gonium pectorale NIES-2863Gracilaria caudata M-176 S67Gracilaria chilensis NLEC103-M9Gracilaria domingensis SP 400837Gracilaria gracilis GNS1mGracilaria vermiculophylla HapMaleFtJ-2017Gracilariopsis chorda SKKU-2015Guillardia theta CCMP 2712 v1.0Haematococcus lacustris Liv1 v1.2Haematococcus lacustris NIES-144Halamphora coffeiformis CCMP127 v1.0Haptolina ericina UIO 028 v1.0Helicosporidium sp. ATCC 50920Hemiaulus hauckii AE1812_P2C5 v1.0Hondaea fermentalgiana CCAP_4062/3Hyaloperonospora arabidopsidis Emoy2 v2.0Hyphochytrium catenoides ATCC 18719Isochrysis galbana Dm2 v1.0Klebsormidium nitens NIES-2285 v1.1Labyrinthula sp. SR_Ha_CLeyanella arenaria CCMP471 v1.0Licmophora sp. DCG 0967 v1.0Limnomonas spitsbergensis CCryo_02-99_CHMacrocystis pyrifera CI_03 v1.0Mayamaea pseudoterrestris NIES-4280Mesodinium rubrum CBJR05 macronucleus v1.0Mesostigma viride CCAC 1140Mesostigma viride NIES-296Mesotaenium endlicherianum SAG 12.97Mesotaenium kramstae Lemmermann NIES-657 v3.0Mesotaenium kramstae Lemmermann NIES-658 v2.0Micractinium conductrix SAG 241.80Microglena sp. YARCMicromonas commoda NOUM17 (RCC 299)Micromonas pusilla CCMP1545Micromonas sp. AD1 metagenome extracted assemblyMinidiscus variabilis CCMP495 v1.0Monodopsis strain C141Monodopsis strain C73Monoraphidium minutum 26B-AM v1.0Monoraphidium neglectum SAG 48.87Myrmecia bisecta SAG 2043Naegleria gruberi v1.0Nannochloris desiccata UTEX 2437Nannochloris desiccata UTEX 2526Nannochloropsis gaditana B-31Nannochloropsis gaditana CCMP1894Nannochloropsis oceanica C018 v1.0Nannochloropsis oceanica CCAP849/10Nannochloropsis oceanica CCMP1779 v2.0Nannochloropsis salina CCMP1776Nanofrustulum trainorii DCG 0449 v1.0Nemacystus decipiens Onna-1Neopyropia yezoensis U-51Nephroselmis sp. RCC6846 v1.0Nereocystis luetkeana NB12FB3 v1.0Nitzschia captiva IRTACC-152 v1.0Nitzschia cf. pellucida DCG 0303 v2.0Nitzschia inconspicua GAI-293 v2.0Nitzschia laevis UTEX B 2047 v1.0Nitzschia palea DCG 0751 v1.0Nitzschia putrida NIES-4239Nitzschia siwaschica DCG 0070 v1.0Ochromonadaceae sp. CCMP2298 v1.0Ochromonas sp. CCMP1393 v1.4Ostreobium quekettii SAG 6.99Ostreococcus lucimarinusOstreococcus sp. RCC809Ostreococcus tauri RCC1115 v1.0Ostreococcus tauri RCC4221 v3.0Oxytricha trifallax JRB310Paramecium tetraurelia d4_2Paraphysomonas imperforata CCMP1604 v1.4Parmales sp. scaly parma v1.0Paulinella micropora KR01Pavlova sp. RCC2550 v1.0Pavlova sp. RCC5622 v1.0Pavlova sp. RCC6257 v1.0Pavlovales sp. CCMP2436 v1.0Pedinomonas minor SAG 1965-3Pedinophyceae sp. YPF-701Pelagophyceae sp. CCMP2097 v1.0Peronosclerospora sorghi P6Peronospora effusa UA202013Phaeocystis antarctica CCMP1374 v2.2Phaeocystis cordata CCMP3104Phaeocystis globosa Pg-G v2.3Phaeodactylum tricornutumPhaeodactylum tricornutum CCAP 1055/1 v2.0Physcomitrium patens v1.1Phytophthora capsici LT1534 v11.0Phytophthora cinnamomi var cinnamomi v1.0Phytophthora infestans T30-4Phytophthora ramorum v1.1Phytophthora sojae v3.0Picochlorum renovoPicochlorum soloecismus DOE101Picocystis sp. MLPlasmodium falciparum 3D7Pleodorina starrii NIES-1363Pleodorina starrii NIES-4479Pleodorina starrii NIES-4481Polarella glacialis CCMP1383Polarella glacialis CCMP2088Populus trichocarpa v1.1Porphyra umbilicalis isolate 4086291Porphyridium purpureum CCMP1328Prasinoderma coloniale CCMP1413Prorocentrum cordatum CCMP1329 v1.0Proteomonas sulcata CCMP 1175 v1.1Prymnesium parvum 12B1 v1.1Prymnesium parvum UTEX LB 2797Psammogramma vigoense DCG 0492 v2.0Pseudo-nitzschia multiseries CLN-47Raphidocelis subcapitata NIES-35Reticulomyxa filosaRhodosorus marinus CCMP1338Saccharina japonica str. JaSaccharina latissima SL-CT1-FG3 v1.0Saccharina latissima SLPER36f v2Saprolegnia parasitica CBS 223.65Sargassum fusiformeScenedesmus dimorphus UTEX 1237 v1.0Scenedesmus obliquus EN0004 v1.0Scenedesmus obliquus SAG 2326 v1.0Scenedesmus obliquus UTEX 3031Scenedesmus obliquus UTEX 3031 haplotype 1Scenedesmus obliquus UTEX 3031 haplotype 2Scenedesmus obliquus UTEX 393 v2.0Scenedesmus obliquus var. DOE0013 v1.0Scenedesmus obliquus var. UTEX 1450 v1.0Scenedesmus obliquus var. UTEX2630 v1.0Scenedesmus sp. NREL 46B-D3 v1.0Scenedesmus sp. WC-1 v1.0Schizochytrium aggregatum ATCC 28209 v1.0Selaginella moellendorffii v1.0Seminavis robusta D6Sorghum bicolorSpirogloea muscicola CCAC 0214Spirogyra pratensis MZCH#10213Staurosirella guenter-grassii DCG 0448 v1.0Symbiochloris reticulata Africa extracted metagenome v1.0Symbiochloris reticulata Scotland extracted metagenome v1.0Symbiochloris reticulata Spain extracted metagenome v1.0Symbiochloris reticulata Spain reference genome v1.0Symbiochloris reticulata Switzerland extracted metagenome v1.0Symbiodinium microadriaticum CCMP2467Teleaulax amphioxeia GCEP01 v1.0Tetrabaena socialis NIES-571Tetradesmus deserticola SNI-2 v1.1Tetradesmus obliquus UTEX 72 v1.1Tetrahymena thermophila SB210Tetraselmis striataThalassiosira oceanica CCMP1005Thalassiosira pseudonana CCMP 1335Thalassiosira pseudonana CCMP 1335 v3.0Thalassiosira rotula CCMP1647 v1.0Thalassiosira rotula FE80 (RCC7813) v1.0Toxoplasma gondii ME49Trebouxia sp. A1-2Trebouxiophyceae sp. bin 3300059473_6682 v1.0Trebouxiophyceae sp. bin 3300059473_978 v1.0Tribonema minus UTEX B 3156 v1.0Trichomonas vaginalis G3Triparma laevis f. inornata v1.0Tryblionella coarctata DCG 1063 v1.0Trypanosoma brucei brucei TREU927Ulva mutabilis FoynUndaria pinnatifida M23Vischeria strain C74Vitrella brassicaformis CCMP3155Volvox africanus NIES-3780Volvox carteri v2.1Volvox reticuliferus NIES-3785Volvox reticuliferus NIES-3786Zygnema cf. cylindricum SAG 698-1aZygnema circumcarinatum SAG 698-1bZygnema circumcarinatum UTEX 1559Zygnema circumcarinatum UTEX 1560Excavata
Excavata
(5 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadEuglena gracilis CCAP 1224/5Z v1.0Giardia intestinalis ATCC 50803Naegleria gruberi v1.0Trichomonas vaginalis G3Trypanosoma brucei brucei TREU927Percolozoa
Archaeplastida
Archaeplastida
(143 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesGeo MappingDownloadApatococcus lobatus SAG 2145Arabidopsis lyrataAsterochloris glomerata Cgr/DA1pho v2.0Astrephomene gubernaculifera NIES-4017Auxenochlorella protothecoides 0710Auxenochlorella protothecoides UTEX 25Bathycoccus prasinos RCC1105Botryococcus braunii ShowaBryopsis sp. KO-2023Caulerpa lentilliferaChara braunii S276Chlamydomonas eustigma NIES-2499Chlamydomonas incerta SAG 7.73Chlamydomonas priscuii UWO241Chlamydomonas reinhardtii CC-4532 v6.1Chlamydomonas reinhardtii CC-503 v5.6Chlamydomonas schloesseri CCAP 11/173Chlorella sp. A99Chlorella sorokiniana DOE1412Chlorella sorokiniana UTEX 1230Chlorella sorokiniana UTEX 1602Chlorella sorokiniana strain 1228Chlorella variabilis NC64A v1.0Chlorellaceae sp. bin 3300059473_4402 v1.0Chlorellaceae sp. bin 3300059473_4966 v1.0Chlorokybus atmophyticus CCAC 0220Chloromonas remiasii CCCryo 005-99 v1.0Chloropicon primus CCMP1205Chondrus crispus StackhouseChromochloris zofingiensis var. SAG 211-14 v6.0Coccomyxa pringsheimii SAG 216-7Coccomyxa subellipsoidea C-169 v3.0Cyanidiococcus sp. NIES 2137 v1.0Cyanidiococcus yangmingshanensis 8.1.23 F7Cyanidioschyzon merolae SoosCyanidioschyzon merolae strain 10DCyanidium caldarium DBV 063 E5Cyanophora paradoxa CCMP329Cyanophora paradoxa CCMP329Desmodesmus armatus UTEX B 2533 v2.0Desmodesmus armatus isolate SE107 v1.0Dunaliella salina CCAP19/18Edaphochlamys debaryana CCAP 11/70Elliptochloris bilobata SAG 245.80Enallax costatus CCAP 276/31 v1.1Flechtneria rotunda SEV3VF49 v1.1Galdieria phlegrea SoosGaldieria sulphuraria 002Galdieria sulphuraria 074WGaldieria sulphuraria 5572Galdieria sulphuraria AzoraGaldieria sulphuraria MS1Galdieria sulphuraria MtShGaldieria sulphuraria RT22Galdieria sulphuraria SAG21.92Galdieria sulphuraria YNP5578.1Galdieria yellowstonensis 108.79 E11Gonium pectorale NIES-2863Gracilaria caudata M-176 S67Gracilaria chilensis NLEC103-M9Gracilaria domingensis SP 400837Gracilaria gracilis GNS1mGracilaria vermiculophylla HapMaleFtJ-2017Gracilariopsis chorda SKKU-2015Haematococcus lacustris Liv1 v1.2Haematococcus lacustris NIES-144Helicosporidium sp. ATCC 50920Klebsormidium nitens NIES-2285 v1.1Limnomonas spitsbergensis CCryo_02-99_CHMesostigma viride CCAC 1140Mesostigma viride NIES-296Mesotaenium endlicherianum SAG 12.97Mesotaenium kramstae Lemmermann NIES-657 v3.0Mesotaenium kramstae Lemmermann NIES-658 v2.0Micractinium conductrix SAG 241.80Microglena sp. YARCMicromonas commoda NOUM17 (RCC 299)Micromonas pusilla CCMP1545Micromonas sp. AD1 metagenome extracted assemblyMonoraphidium minutum 26B-AM v1.0Monoraphidium neglectum SAG 48.87Myrmecia bisecta SAG 2043Nannochloris desiccata UTEX 2437Nannochloris desiccata UTEX 2526Neopyropia yezoensis U-51Nephroselmis sp. RCC6846 v1.0Ostreobium quekettii SAG 6.99Ostreococcus lucimarinusOstreococcus sp. RCC809Ostreococcus tauri RCC1115 v1.0Ostreococcus tauri RCC4221 v3.0Pedinomonas minor SAG 1965-3Pedinophyceae sp. YPF-701Physcomitrium patens v1.1Picochlorum renovoPicochlorum soloecismus DOE101Picocystis sp. MLPleodorina starrii NIES-1363Pleodorina starrii NIES-4479Pleodorina starrii NIES-4481Populus trichocarpa v1.1Porphyra umbilicalis isolate 4086291Porphyridium purpureum CCMP1328Prasinoderma coloniale CCMP1413Raphidocelis subcapitata NIES-35Rhodosorus marinus CCMP1338Scenedesmus dimorphus UTEX 1237 v1.0Scenedesmus obliquus EN0004 v1.0Scenedesmus obliquus SAG 2326 v1.0Scenedesmus obliquus UTEX 3031Scenedesmus obliquus UTEX 3031 haplotype 1Scenedesmus obliquus UTEX 3031 haplotype 2Scenedesmus obliquus UTEX 393 v2.0Scenedesmus obliquus var. DOE0013 v1.0Scenedesmus obliquus var. UTEX 1450 v1.0Scenedesmus obliquus var. UTEX2630 v1.0Scenedesmus sp. NREL 46B-D3 v1.0Scenedesmus sp. WC-1 v1.0Selaginella moellendorffii v1.0Sorghum bicolorSpirogloea muscicola CCAC 0214Spirogyra pratensis MZCH#10213Symbiochloris reticulata Africa extracted metagenome v1.0Symbiochloris reticulata Scotland extracted metagenome v1.0Symbiochloris reticulata Spain extracted metagenome v1.0Symbiochloris reticulata Spain reference genome v1.0Symbiochloris reticulata Switzerland extracted metagenome v1.0Tetrabaena socialis NIES-571Tetradesmus deserticola SNI-2 v1.1Tetradesmus obliquus UTEX 72 v1.1Tetraselmis striataTrebouxia sp. A1-2Trebouxiophyceae sp. bin 3300059473_6682 v1.0Trebouxiophyceae sp. bin 3300059473_978 v1.0Ulva mutabilis FoynVolvox africanus NIES-3780Volvox carteri v2.1Volvox reticuliferus NIES-3785Volvox reticuliferus NIES-3786Zygnema cf. cylindricum SAG 698-1aZygnema circumcarinatum SAG 698-1bZygnema circumcarinatum UTEX 1559Zygnema circumcarinatum UTEX 1560Viridiplantae
Viridiplantae
(114 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadApatococcus lobatus SAG 2145Arabidopsis lyrataAsterochloris glomerata Cgr/DA1pho v2.0Astrephomene gubernaculifera NIES-4017Auxenochlorella protothecoides 0710Auxenochlorella protothecoides UTEX 25Bathycoccus prasinos RCC1105Botryococcus braunii ShowaBryopsis sp. KO-2023Caulerpa lentilliferaChara braunii S276Chlamydomonas eustigma NIES-2499Chlamydomonas incerta SAG 7.73Chlamydomonas priscuii UWO241Chlamydomonas reinhardtii CC-4532 v6.1Chlamydomonas reinhardtii CC-503 v5.6Chlamydomonas schloesseri CCAP 11/173Chlorella sp. A99Chlorella sorokiniana DOE1412Chlorella sorokiniana UTEX 1230Chlorella sorokiniana UTEX 1602Chlorella sorokiniana strain 1228Chlorella variabilis NC64A v1.0Chlorellaceae sp. bin 3300059473_4402 v1.0Chlorellaceae sp. bin 3300059473_4966 v1.0Chlorokybus atmophyticus CCAC 0220Chloromonas remiasii CCCryo 005-99 v1.0Chloropicon primus CCMP1205Chromochloris zofingiensis var. SAG 211-14 v6.0Coccomyxa pringsheimii SAG 216-7Coccomyxa subellipsoidea C-169 v3.0Desmodesmus armatus UTEX B 2533 v2.0Desmodesmus armatus isolate SE107 v1.0Dunaliella salina CCAP19/18Edaphochlamys debaryana CCAP 11/70Elliptochloris bilobata SAG 245.80Enallax costatus CCAP 276/31 v1.1Flechtneria rotunda SEV3VF49 v1.1Gonium pectorale NIES-2863Haematococcus lacustris Liv1 v1.2Haematococcus lacustris NIES-144Helicosporidium sp. ATCC 50920Klebsormidium nitens NIES-2285 v1.1Limnomonas spitsbergensis CCryo_02-99_CHMesostigma viride CCAC 1140Mesostigma viride NIES-296Mesotaenium endlicherianum SAG 12.97Mesotaenium kramstae Lemmermann NIES-657 v3.0Mesotaenium kramstae Lemmermann NIES-658 v2.0Micractinium conductrix SAG 241.80Microglena sp. YARCMicromonas commoda NOUM17 (RCC 299)Micromonas pusilla CCMP1545Micromonas sp. AD1 metagenome extracted assemblyMonoraphidium minutum 26B-AM v1.0Monoraphidium neglectum SAG 48.87Myrmecia bisecta SAG 2043Nannochloris desiccata UTEX 2437Nannochloris desiccata UTEX 2526Nephroselmis sp. RCC6846 v1.0Ostreobium quekettii SAG 6.99Ostreococcus lucimarinusOstreococcus sp. RCC809Ostreococcus tauri RCC1115 v1.0Ostreococcus tauri RCC4221 v3.0Pedinomonas minor SAG 1965-3Pedinophyceae sp. YPF-701Physcomitrium patens v1.1Picochlorum renovoPicochlorum soloecismus DOE101Picocystis sp. MLPleodorina starrii NIES-1363Pleodorina starrii NIES-4479Pleodorina starrii NIES-4481Populus trichocarpa v1.1Prasinoderma coloniale CCMP1413Raphidocelis subcapitata NIES-35Scenedesmus dimorphus UTEX 1237 v1.0Scenedesmus obliquus EN0004 v1.0Scenedesmus obliquus SAG 2326 v1.0Scenedesmus obliquus UTEX 3031Scenedesmus obliquus UTEX 3031 haplotype 1Scenedesmus obliquus UTEX 3031 haplotype 2Scenedesmus obliquus UTEX 393 v2.0Scenedesmus obliquus var. DOE0013 v1.0Scenedesmus obliquus var. UTEX 1450 v1.0Scenedesmus obliquus var. UTEX2630 v1.0Scenedesmus sp. NREL 46B-D3 v1.0Scenedesmus sp. WC-1 v1.0Selaginella moellendorffii v1.0Sorghum bicolorSpirogloea muscicola CCAC 0214Spirogyra pratensis MZCH#10213Symbiochloris reticulata Africa extracted metagenome v1.0Symbiochloris reticulata Scotland extracted metagenome v1.0Symbiochloris reticulata Spain extracted metagenome v1.0Symbiochloris reticulata Spain reference genome v1.0Symbiochloris reticulata Switzerland extracted metagenome v1.0Tetrabaena socialis NIES-571Tetradesmus deserticola SNI-2 v1.1Tetradesmus obliquus UTEX 72 v1.1Tetraselmis striataTrebouxia sp. A1-2Trebouxiophyceae sp. bin 3300059473_6682 v1.0Trebouxiophyceae sp. bin 3300059473_978 v1.0Ulva mutabilis FoynVolvox africanus NIES-3780Volvox carteri v2.1Volvox reticuliferus NIES-3785Volvox reticuliferus NIES-3786Zygnema cf. cylindricum SAG 698-1aZygnema circumcarinatum SAG 698-1bZygnema circumcarinatum UTEX 1559Zygnema circumcarinatum UTEX 1560Chlorophyta
Chlorophyta
(94 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadApatococcus lobatus SAG 2145Asterochloris glomerata Cgr/DA1pho v2.0Astrephomene gubernaculifera NIES-4017Auxenochlorella protothecoides 0710Auxenochlorella protothecoides UTEX 25Bathycoccus prasinos RCC1105Botryococcus braunii ShowaBryopsis sp. KO-2023Caulerpa lentilliferaChlamydomonas eustigma NIES-2499Chlamydomonas incerta SAG 7.73Chlamydomonas priscuii UWO241Chlamydomonas reinhardtii CC-4532 v6.1Chlamydomonas reinhardtii CC-503 v5.6Chlamydomonas schloesseri CCAP 11/173Chlorella sp. A99Chlorella sorokiniana DOE1412Chlorella sorokiniana UTEX 1230Chlorella sorokiniana UTEX 1602Chlorella sorokiniana strain 1228Chlorella variabilis NC64A v1.0Chlorellaceae sp. bin 3300059473_4402 v1.0Chlorellaceae sp. bin 3300059473_4966 v1.0Chloromonas remiasii CCCryo 005-99 v1.0Chloropicon primus CCMP1205Chromochloris zofingiensis var. SAG 211-14 v6.0Coccomyxa pringsheimii SAG 216-7Coccomyxa subellipsoidea C-169 v3.0Desmodesmus armatus UTEX B 2533 v2.0Desmodesmus armatus isolate SE107 v1.0Dunaliella salina CCAP19/18Edaphochlamys debaryana CCAP 11/70Elliptochloris bilobata SAG 245.80Enallax costatus CCAP 276/31 v1.1Flechtneria rotunda SEV3VF49 v1.1Gonium pectorale NIES-2863Haematococcus lacustris Liv1 v1.2Haematococcus lacustris NIES-144Helicosporidium sp. ATCC 50920Limnomonas spitsbergensis CCryo_02-99_CHMicractinium conductrix SAG 241.80Microglena sp. YARCMicromonas commoda NOUM17 (RCC 299)Micromonas pusilla CCMP1545Micromonas sp. AD1 metagenome extracted assemblyMonoraphidium minutum 26B-AM v1.0Monoraphidium neglectum SAG 48.87Myrmecia bisecta SAG 2043Nannochloris desiccata UTEX 2437Nannochloris desiccata UTEX 2526Nephroselmis sp. RCC6846 v1.0Ostreobium quekettii SAG 6.99Ostreococcus lucimarinusOstreococcus sp. RCC809Ostreococcus tauri RCC1115 v1.0Ostreococcus tauri RCC4221 v3.0Pedinomonas minor SAG 1965-3Pedinophyceae sp. YPF-701Picochlorum renovoPicochlorum soloecismus DOE101Picocystis sp. MLPleodorina starrii NIES-1363Pleodorina starrii NIES-4479Pleodorina starrii NIES-4481Raphidocelis subcapitata NIES-35Scenedesmus dimorphus UTEX 1237 v1.0Scenedesmus obliquus EN0004 v1.0Scenedesmus obliquus SAG 2326 v1.0Scenedesmus obliquus UTEX 3031Scenedesmus obliquus UTEX 3031 haplotype 1Scenedesmus obliquus UTEX 3031 haplotype 2Scenedesmus obliquus UTEX 393 v2.0Scenedesmus obliquus var. DOE0013 v1.0Scenedesmus obliquus var. UTEX 1450 v1.0Scenedesmus obliquus var. UTEX2630 v1.0Scenedesmus sp. NREL 46B-D3 v1.0Scenedesmus sp. WC-1 v1.0Symbiochloris reticulata Africa extracted metagenome v1.0Symbiochloris reticulata Scotland extracted metagenome v1.0Symbiochloris reticulata Spain extracted metagenome v1.0Symbiochloris reticulata Spain reference genome v1.0Symbiochloris reticulata Switzerland extracted metagenome v1.0Tetrabaena socialis NIES-571Tetradesmus deserticola SNI-2 v1.1Tetradesmus obliquus UTEX 72 v1.1Tetraselmis striataTrebouxia sp. A1-2Trebouxiophyceae sp. bin 3300059473_6682 v1.0Trebouxiophyceae sp. bin 3300059473_978 v1.0Ulva mutabilis FoynVolvox africanus NIES-3780Volvox carteri v2.1Volvox reticuliferus NIES-3785Volvox reticuliferus NIES-3786Streptophyta
Streptophyta
(19 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadArabidopsis lyrataChara braunii S276Chlorokybus atmophyticus CCAC 0220Klebsormidium nitens NIES-2285 v1.1Mesostigma viride CCAC 1140Mesostigma viride NIES-296Mesotaenium endlicherianum SAG 12.97Mesotaenium kramstae Lemmermann NIES-657 v3.0Mesotaenium kramstae Lemmermann NIES-658 v2.0Physcomitrium patens v1.1Populus trichocarpa v1.1Selaginella moellendorffii v1.0Sorghum bicolorSpirogloea muscicola CCAC 0214Spirogyra pratensis MZCH#10213Zygnema cf. cylindricum SAG 698-1aZygnema circumcarinatum SAG 698-1bZygnema circumcarinatum UTEX 1559Zygnema circumcarinatum UTEX 1560Embryophyta
Rhizaria
Cercozoa
Foraminifera
Oomycota
Oomycota
(10 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadBremia lactucae SF5Hyaloperonospora arabidopsidis Emoy2 v2.0Peronosclerospora sorghi P6Peronospora effusa UA202013Phytophthora capsici LT1534 v11.0Phytophthora cinnamomi var cinnamomi v1.0Phytophthora infestans T30-4Phytophthora ramorum v1.1Phytophthora sojae v3.0Saprolegnia parasitica CBS 223.65Heterokonta
Heterokonta
(87 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadAlaria esculenta A1Aplanochytrium kerguelense PBS07 v1.0Asterionellopsis glacialis CCMP134 v1.0Aurantiochytrium limacinum ATCC MYA-1381 v1.0Aureococcus anophagefferens clone 1984 v1.0Bacillariophyceae sp. MOSAICH1_1 v1.0Blastocystis hominis Singapore isolate B (sub-type 7)Bremia lactucae SF5Cafeteria roenbergensis BVIChaetoceros tenuissimus NIES-3715Cladosiphon okamuranus S strainConticribra weissflogii CCMP 1336Craspedostauros australis CCMP3328 v1.0Cyclotella cryptica CCMP332 v2.0Cylindrotheca closterium CA1.15 DCG0923Cylindrotheca closterium DCG 1248 v1.0Ectocarpus siliculosus Ec 32Entomoneis sp. UTEX 11IV18-2A FL v1.0Fistulifera solaris JPCC DA0580Fragilaria crotonensis SAG 28.96Fragilariopsis cylindrus CCMP 1102Fragilariopsis cylindrus RCC4608 v1.0Fragilariopsis cylindrus RCC5501 v1.0Glossomastix sp. RCC3688 v2.1Halamphora coffeiformis CCMP127 v1.0Hemiaulus hauckii AE1812_P2C5 v1.0Hondaea fermentalgiana CCAP_4062/3Hyaloperonospora arabidopsidis Emoy2 v2.0Hyphochytrium catenoides ATCC 18719Labyrinthula sp. SR_Ha_CLeyanella arenaria CCMP471 v1.0Licmophora sp. DCG 0967 v1.0Macrocystis pyrifera CI_03 v1.0Mayamaea pseudoterrestris NIES-4280Minidiscus variabilis CCMP495 v1.0Monodopsis strain C141Monodopsis strain C73Nannochloropsis gaditana B-31Nannochloropsis gaditana CCMP1894Nannochloropsis oceanica C018 v1.0Nannochloropsis oceanica CCAP849/10Nannochloropsis oceanica CCMP1779 v2.0Nannochloropsis salina CCMP1776Nanofrustulum trainorii DCG 0449 v1.0Nemacystus decipiens Onna-1Nereocystis luetkeana NB12FB3 v1.0Nitzschia captiva IRTACC-152 v1.0Nitzschia cf. pellucida DCG 0303 v2.0Nitzschia inconspicua GAI-293 v2.0Nitzschia laevis UTEX B 2047 v1.0Nitzschia palea DCG 0751 v1.0Nitzschia putrida NIES-4239Nitzschia siwaschica DCG 0070 v1.0Ochromonadaceae sp. CCMP2298 v1.0Ochromonas sp. CCMP1393 v1.4Paraphysomonas imperforata CCMP1604 v1.4Parmales sp. scaly parma v1.0Pelagophyceae sp. CCMP2097 v1.0Peronosclerospora sorghi P6Peronospora effusa UA202013Phaeodactylum tricornutumPhaeodactylum tricornutum CCAP 1055/1 v2.0Phytophthora capsici LT1534 v11.0Phytophthora cinnamomi var cinnamomi v1.0Phytophthora infestans T30-4Phytophthora ramorum v1.1Phytophthora sojae v3.0Psammogramma vigoense DCG 0492 v2.0Pseudo-nitzschia multiseries CLN-47Saccharina japonica str. JaSaccharina latissima SL-CT1-FG3 v1.0Saccharina latissima SLPER36f v2Saprolegnia parasitica CBS 223.65Sargassum fusiformeSchizochytrium aggregatum ATCC 28209 v1.0Seminavis robusta D6Staurosirella guenter-grassii DCG 0448 v1.0Thalassiosira oceanica CCMP1005Thalassiosira pseudonana CCMP 1335Thalassiosira pseudonana CCMP 1335 v3.0Thalassiosira rotula CCMP1647 v1.0Thalassiosira rotula FE80 (RCC7813) v1.0Tribonema minus UTEX B 3156 v1.0Triparma laevis f. inornata v1.0Tryblionella coarctata DCG 1063 v1.0Undaria pinnatifida M23Vischeria strain C74Ochrophyta
Ochrophyta
(69 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesGeo MappingDownloadAlaria esculenta A1Asterionellopsis glacialis CCMP134 v1.0Aureococcus anophagefferens clone 1984 v1.0Bacillariophyceae sp. MOSAICH1_1 v1.0Chaetoceros tenuissimus NIES-3715Cladosiphon okamuranus S strainConticribra weissflogii CCMP 1336Craspedostauros australis CCMP3328 v1.0Cyclotella cryptica CCMP332 v2.0Cylindrotheca closterium CA1.15 DCG0923Cylindrotheca closterium DCG 1248 v1.0Ectocarpus siliculosus Ec 32Entomoneis sp. UTEX 11IV18-2A FL v1.0Fistulifera solaris JPCC DA0580Fragilaria crotonensis SAG 28.96Fragilariopsis cylindrus CCMP 1102Fragilariopsis cylindrus RCC4608 v1.0Fragilariopsis cylindrus RCC5501 v1.0Glossomastix sp. RCC3688 v2.1Halamphora coffeiformis CCMP127 v1.0Hemiaulus hauckii AE1812_P2C5 v1.0Leyanella arenaria CCMP471 v1.0Licmophora sp. DCG 0967 v1.0Macrocystis pyrifera CI_03 v1.0Mayamaea pseudoterrestris NIES-4280Minidiscus variabilis CCMP495 v1.0Monodopsis strain C141Monodopsis strain C73Nannochloropsis gaditana B-31Nannochloropsis gaditana CCMP1894Nannochloropsis oceanica C018 v1.0Nannochloropsis oceanica CCAP849/10Nannochloropsis oceanica CCMP1779 v2.0Nannochloropsis salina CCMP1776Nanofrustulum trainorii DCG 0449 v1.0Nemacystus decipiens Onna-1Nereocystis luetkeana NB12FB3 v1.0Nitzschia captiva IRTACC-152 v1.0Nitzschia cf. pellucida DCG 0303 v2.0Nitzschia inconspicua GAI-293 v2.0Nitzschia laevis UTEX B 2047 v1.0Nitzschia palea DCG 0751 v1.0Nitzschia putrida NIES-4239Nitzschia siwaschica DCG 0070 v1.0Ochromonadaceae sp. CCMP2298 v1.0Ochromonas sp. CCMP1393 v1.4Paraphysomonas imperforata CCMP1604 v1.4Parmales sp. scaly parma v1.0Pelagophyceae sp. CCMP2097 v1.0Phaeodactylum tricornutumPhaeodactylum tricornutum CCAP 1055/1 v2.0Psammogramma vigoense DCG 0492 v2.0Pseudo-nitzschia multiseries CLN-47Saccharina japonica str. JaSaccharina latissima SL-CT1-FG3 v1.0Saccharina latissima SLPER36f v2Sargassum fusiformeSeminavis robusta D6Staurosirella guenter-grassii DCG 0448 v1.0Thalassiosira oceanica CCMP1005Thalassiosira pseudonana CCMP 1335Thalassiosira pseudonana CCMP 1335 v3.0Thalassiosira rotula CCMP1647 v1.0Thalassiosira rotula FE80 (RCC7813) v1.0Tribonema minus UTEX B 3156 v1.0Triparma laevis f. inornata v1.0Tryblionella coarctata DCG 1063 v1.0Undaria pinnatifida M23Vischeria strain C74Labyrinthulomycota
Labyrinthulomycota
(5 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadAplanochytrium kerguelense PBS07 v1.0Aurantiochytrium limacinum ATCC MYA-1381 v1.0Hondaea fermentalgiana CCAP_4062/3Labyrinthula sp. SR_Ha_CSchizochytrium aggregatum ATCC 28209 v1.0Alveolata
Alveolata
(18 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadAmoebophrya ceratii AT5.2Breviolum minutumChromera velia CCMP2878Cladocopium goreaui SCF055-01Durusdinium trenchii NIES-2907Effrenium voratum CCMP421Fugacium kawagutii CCMP2468Mesodinium rubrum CBJR05 macronucleus v1.0Oxytricha trifallax JRB310Paramecium tetraurelia d4_2Plasmodium falciparum 3D7Polarella glacialis CCMP1383Polarella glacialis CCMP2088Prorocentrum cordatum CCMP1329 v1.0Symbiodinium microadriaticum CCMP2467Tetrahymena thermophila SB210Toxoplasma gondii ME49Vitrella brassicaformis CCMP3155Apicomplexa
Ciliophora
Euglenozoa
Rhodophyta
Rhodophyta
(27 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadChondrus crispus StackhouseCyanidiococcus sp. NIES 2137 v1.0Cyanidiococcus yangmingshanensis 8.1.23 F7Cyanidioschyzon merolae SoosCyanidioschyzon merolae strain 10DCyanidium caldarium DBV 063 E5Galdieria phlegrea SoosGaldieria sulphuraria 002Galdieria sulphuraria 074WGaldieria sulphuraria 5572Galdieria sulphuraria AzoraGaldieria sulphuraria MS1Galdieria sulphuraria MtShGaldieria sulphuraria RT22Galdieria sulphuraria SAG21.92Galdieria sulphuraria YNP5578.1Galdieria yellowstonensis 108.79 E11Gracilaria caudata M-176 S67Gracilaria chilensis NLEC103-M9Gracilaria domingensis SP 400837Gracilaria gracilis GNS1mGracilaria vermiculophylla HapMaleFtJ-2017Gracilariopsis chorda SKKU-2015Neopyropia yezoensis U-51Porphyra umbilicalis isolate 4086291Porphyridium purpureum CCMP1328Rhodosorus marinus CCMP1338Glaucophyta
Prasinodermophyta
Chlorophyceae
Chlorophyceae
(45 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadAstrephomene gubernaculifera NIES-4017Chlamydomonas eustigma NIES-2499Chlamydomonas incerta SAG 7.73Chlamydomonas priscuii UWO241Chlamydomonas reinhardtii CC-4532 v6.1Chlamydomonas reinhardtii CC-503 v5.6Chlamydomonas schloesseri CCAP 11/173Chloromonas remiasii CCCryo 005-99 v1.0Chromochloris zofingiensis var. SAG 211-14 v6.0Desmodesmus armatus UTEX B 2533 v2.0Desmodesmus armatus isolate SE107 v1.0Dunaliella salina CCAP19/18Edaphochlamys debaryana CCAP 11/70Enallax costatus CCAP 276/31 v1.1Flechtneria rotunda SEV3VF49 v1.1Gonium pectorale NIES-2863Haematococcus lacustris Liv1 v1.2Haematococcus lacustris NIES-144Limnomonas spitsbergensis CCryo_02-99_CHMicroglena sp. YARCMonoraphidium minutum 26B-AM v1.0Monoraphidium neglectum SAG 48.87Pleodorina starrii NIES-1363Pleodorina starrii NIES-4479Pleodorina starrii NIES-4481Raphidocelis subcapitata NIES-35Scenedesmus dimorphus UTEX 1237 v1.0Scenedesmus obliquus EN0004 v1.0Scenedesmus obliquus SAG 2326 v1.0Scenedesmus obliquus UTEX 3031Scenedesmus obliquus UTEX 3031 haplotype 1Scenedesmus obliquus UTEX 3031 haplotype 2Scenedesmus obliquus UTEX 393 v2.0Scenedesmus obliquus var. DOE0013 v1.0Scenedesmus obliquus var. UTEX 1450 v1.0Scenedesmus obliquus var. UTEX2630 v1.0Scenedesmus sp. NREL 46B-D3 v1.0Scenedesmus sp. WC-1 v1.0Tetrabaena socialis NIES-571Tetradesmus deserticola SNI-2 v1.1Tetradesmus obliquus UTEX 72 v1.1Volvox africanus NIES-3780Volvox carteri v2.1Volvox reticuliferus NIES-3785Volvox reticuliferus NIES-3786Ulvophyceae
Trebouxiophyceae
Trebouxiophyceae
(31 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadApatococcus lobatus SAG 2145Asterochloris glomerata Cgr/DA1pho v2.0Auxenochlorella protothecoides 0710Auxenochlorella protothecoides UTEX 25Botryococcus braunii ShowaChlorella sp. A99Chlorella sorokiniana DOE1412Chlorella sorokiniana UTEX 1230Chlorella sorokiniana UTEX 1602Chlorella sorokiniana strain 1228Chlorella variabilis NC64A v1.0Chlorellaceae sp. bin 3300059473_4402 v1.0Chlorellaceae sp. bin 3300059473_4966 v1.0Coccomyxa pringsheimii SAG 216-7Coccomyxa subellipsoidea C-169 v3.0Elliptochloris bilobata SAG 245.80Helicosporidium sp. ATCC 50920Micractinium conductrix SAG 241.80Myrmecia bisecta SAG 2043Nannochloris desiccata UTEX 2437Nannochloris desiccata UTEX 2526Picochlorum renovoPicochlorum soloecismus DOE101Symbiochloris reticulata Africa extracted metagenome v1.0Symbiochloris reticulata Scotland extracted metagenome v1.0Symbiochloris reticulata Spain extracted metagenome v1.0Symbiochloris reticulata Spain reference genome v1.0Symbiochloris reticulata Switzerland extracted metagenome v1.0Trebouxia sp. A1-2Trebouxiophyceae sp. bin 3300059473_6682 v1.0Trebouxiophyceae sp. bin 3300059473_978 v1.0Chlorodendrophyceae
Chloropicophyceae
Picocystophyceae
Mamiellophyceae
Mamiellophyceae
(8 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadBathycoccus prasinos RCC1105Micromonas commoda NOUM17 (RCC 299)Micromonas pusilla CCMP1545Micromonas sp. AD1 metagenome extracted assemblyOstreococcus lucimarinusOstreococcus sp. RCC809Ostreococcus tauri RCC1115 v1.0Ostreococcus tauri RCC4221 v3.0Chlorokybophyceae
Mesostigmatophyceae
Klebsormidiophyceae
Zygnemophyceae
Zygnemophyceae
(9 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadMesotaenium endlicherianum SAG 12.97Mesotaenium kramstae Lemmermann NIES-657 v3.0Mesotaenium kramstae Lemmermann NIES-658 v2.0Spirogloea muscicola CCAC 0214Spirogyra pratensis MZCH#10213Zygnema cf. cylindricum SAG 698-1aZygnema circumcarinatum SAG 698-1bZygnema circumcarinatum UTEX 1559Zygnema circumcarinatum UTEX 1560Charophyceae
Cryptophyta
Haptophyta
Haptophyta
(20 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadChrysochromulina parva LackeyChrysochromulina tobin CCMP291Diacronema lutheri NIVA-4/92Dicrateria rotunda RCC2298 v1.1Dicrateria rotunda RCC4477 v3.0Dicrateria rotunda RCC4500 v1.0Dicrateria rotunda RCC4501 v1.0Dicrateria rotunda RCC4780 v1.0Emiliania huxleyi CCMP1516 v1.0Haptolina ericina UIO 028 v1.0Isochrysis galbana Dm2 v1.0Pavlova sp. RCC2550 v1.0Pavlova sp. RCC5622 v1.0Pavlova sp. RCC6257 v1.0Pavlovales sp. CCMP2436 v1.0Phaeocystis antarctica CCMP1374 v2.2Phaeocystis cordata CCMP3104Phaeocystis globosa Pg-G v2.3Prymnesium parvum 12B1 v1.1Prymnesium parvum UTEX LB 2797Chlorarachniophyta
Paulinellidae
Bacillariophyta
Bacillariophyta
(40 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadAsterionellopsis glacialis CCMP134 v1.0Bacillariophyceae sp. MOSAICH1_1 v1.0Chaetoceros tenuissimus NIES-3715Conticribra weissflogii CCMP 1336Craspedostauros australis CCMP3328 v1.0Cyclotella cryptica CCMP332 v2.0Cylindrotheca closterium CA1.15 DCG0923Cylindrotheca closterium DCG 1248 v1.0Entomoneis sp. UTEX 11IV18-2A FL v1.0Fistulifera solaris JPCC DA0580Fragilaria crotonensis SAG 28.96Fragilariopsis cylindrus CCMP 1102Fragilariopsis cylindrus RCC4608 v1.0Fragilariopsis cylindrus RCC5501 v1.0Halamphora coffeiformis CCMP127 v1.0Hemiaulus hauckii AE1812_P2C5 v1.0Leyanella arenaria CCMP471 v1.0Licmophora sp. DCG 0967 v1.0Mayamaea pseudoterrestris NIES-4280Minidiscus variabilis CCMP495 v1.0Nanofrustulum trainorii DCG 0449 v1.0Nitzschia captiva IRTACC-152 v1.0Nitzschia cf. pellucida DCG 0303 v2.0Nitzschia inconspicua GAI-293 v2.0Nitzschia laevis UTEX B 2047 v1.0Nitzschia palea DCG 0751 v1.0Nitzschia putrida NIES-4239Nitzschia siwaschica DCG 0070 v1.0Phaeodactylum tricornutumPhaeodactylum tricornutum CCAP 1055/1 v2.0Psammogramma vigoense DCG 0492 v2.0Pseudo-nitzschia multiseries CLN-47Seminavis robusta D6Staurosirella guenter-grassii DCG 0448 v1.0Thalassiosira oceanica CCMP1005Thalassiosira pseudonana CCMP 1335Thalassiosira pseudonana CCMP 1335 v3.0Thalassiosira rotula CCMP1647 v1.0Thalassiosira rotula FE80 (RCC7813) v1.0Tryblionella coarctata DCG 1063 v1.0Phaeophyta
Phaeophyta
(11 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadAlaria esculenta A1Cladosiphon okamuranus S strainEctocarpus siliculosus Ec 32Macrocystis pyrifera CI_03 v1.0Nemacystus decipiens Onna-1Nereocystis luetkeana NB12FB3 v1.0Saccharina japonica str. JaSaccharina latissima SL-CT1-FG3 v1.0Saccharina latissima SLPER36f v2Sargassum fusiformeUndaria pinnatifida M23Xanthophyta
Eustigmatophyta
Eustigmatophyta
(9 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadMonodopsis strain C141Monodopsis strain C73Nannochloropsis gaditana B-31Nannochloropsis gaditana CCMP1894Nannochloropsis oceanica C018 v1.0Nannochloropsis oceanica CCAP849/10Nannochloropsis oceanica CCMP1779 v2.0Nannochloropsis salina CCMP1776Vischeria strain C74Chrysophyta
Dictyochophyta
Pelagophyta
Chromerida
Dinophyta
Dinophyta
(10 genomes)
TreeSearchBLASTPFAM DomainsSMURF ClustersCAZymesPeptidasesTransportersTranscription FactorsComparative enzymesMCL ClustersGeo MappingDownloadAmoebophrya ceratii AT5.2Breviolum minutumCladocopium goreaui SCF055-01Durusdinium trenchii NIES-2907Effrenium voratum CCMP421Fugacium kawagutii CCMP2468Polarella glacialis CCMP1383Polarella glacialis CCMP2088Prorocentrum cordatum CCMP1329 v1.0Symbiodinium microadriaticum CCMP2467All PhycoCosm Groups
Phycocosm100 Diatom Genomes ProjectAlgaeAlveolataAntarctic algaeApicomplexaArchaeplastidaArctic algaeBacillariaceaeBacillarialesBacillariophyceaeBacillariophytaBangiophyceaeCercozoaCharophyceaeChlamydomonadalesChlorarachniophytaChlorellaChlorellaceaeChlorellalesChlorodendrophyceaeChlorokybophyceaeChlorophyceaeChlorophytaChloropicophyceaeChromeridaChrysochromulinaceaeChrysophytaCiliophoraCladonia grayi LichenCladosporiaceaeCladosporialesCladosporiumCoscinodiscophyceaeCryptophytaCyanidialesDicrateriaDictyochophytaDinophytaElliptochloris cladeEmbryophytaEpicoccum MycoEdEuglenophytaEuglenozoaEustigmatophytaExcavataFlorideophyceaeForaminiferaGaldierialesGlaucophytaHaptophytaHeterokontaIlyonectriaIsochrysidalesKlebsormidiophyceaeLabyrinthulomycotaLichen photobiontsLichensMamiellaceaeMamiellalesMamiellophyceaeMesostigmatophyceaeMetamonadaMicractiniumMicromonasNitzschiaNoelaerhabdaceaeNucleomorph algaeOchromonadaceaeOchrophytaOomycotaOpisthokontaPaulinellidaePavlovaceaePavlovalesPavlovophyceaePedinophyceaePelagophytaPercolozoaPhaeocystaceaePhaeocystalesPhaeophytaPhytoplanktonPicocystophyceaePlant PathogensPolar algaePrasinodermophyceaePrasinodermophytaPrymnesiaceaePrymnesialesPrymnesiophyceaePrymnesiumPsychrophilic algaeRhizariaRhodophytaScenedesmaceaeScenedesmusSeaweedsStreptophytaSuessialesSymbiodiniaceaeSynurophyceaeTrebouxiaceaeTrebouxialesTrebouxiophyceaeTrichoderma MycoEdUlvophyceaeViridiplantaeXanthophytaZygnemophyceae
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For PhycoCosm, please cite:
Igor V Grigoriev, Richard D Hayes, Sara Calhoun, Bishoy Kamel, Alice Wang, Steven Ahrendt, Sergey Dusheyko, Roman Nikitin, Stephen J Mondo, Asaf Salamov, Igor Shabalov, Alan Kuo, PhycoCosm, a comparative algal genomics resource,
Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D1004–D1011, DOI:10.1093/nar/gkaa898
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- Mycocosm Portal version:20.76-863584f myco-web-dev-1.jgi.lbl.gov Release Date:03-Jun-2026 09:42:28 PST Current Date:24-Jun-2026 11:08:18.33 PDT